%META:TOPICINFO{author="ProjectContributor" format="1.1" version="$Rev$"}%

NEXUSTREES{"Topic"} -- display phylogeny

* NEXUSTREES macro is used to view the tree block of a nexus file. It contains two panel. The left panel display PhyloWidget applet. The right panel contains a clickable tree list. In order for PhyloWidget to render the tree, click on the tree name. * Syntax:

%NEXUSTREES{"Web.Topic"
attachment="example.nex"
header="<h3>Tree List</h3>$n"
format="   * $treeid $treeName"
footer="<h3>End</h3>"
separator="$n"
}%

* Supported parameters:

Parameter:	Description:	Default:
"Web.Topic"	Topic name whose content is either in nexus format or has an nexus file attachment.	-
attachment="example.nex"	A nexus formatted file attachment.	-
header="<h3>Tree List</h3>$n"	String that will decorate the value of format parameter.	-
format="   * $treeid $treeName"	This string is repeated according to the number of trees in the nexus file. $treeid & $treeName are replace with serial number and tree name.	-
footer="<h3>End</h3>"	String that will decorate the value of format parameter.	-
separator="$n"	This value is used to separate format parameter values. It can contain Foswiki recognised parameters.	-

* Examples 1:

%NEXUSTREES{"%SYSTEMWEB%/PhyloWidgetExample"
    attachment="Tree.nex"
    header="<h3>Tree List</h3>$n"
    format="   * <a href='%SCRIPTURL{"rest"}%/PhyloWidgetPlugin/getNHX?web=System;topic=System.PhyloWidgetExample;attachment=Tree.nex;tree=$treeid'>$treeName</a>"
    footer="<h3>***********</h3>"
    separator="$n"
    }%

• Result (if installed): %NEXUSTREES{"System/PhyloWidgetExample" attachment="Tree.nex" header="

  Tree List

  $n" format=" * $treeName" footer="

  ***********

  $n" separator="$n" }% * Examples 2: PhyloViewTrees See also: PhyloWidgetPlugin, PHYLOWIDGET, PhyloViewTrees