%META:TOPICINFO{author="ProjectContributor" format="1.1" version="$Rev$"}%

NEXUSTREES{"Topic"} -- display phylogeny

* NEXUSTREES macro is used to view the tree block of a nexus file. It contains two panel. The left panel display PhyloWidget applet. The right panel contains a clickable tree list. In order for PhyloWidget to render the tree, click on the tree name. * Syntax:
header="<h3>Tree List</h3>$n"
format="   * $treeid $treeName"
* Supported parameters:
Parameter: Description: Default:
"Web.Topic" Topic name whose content is either in nexus format or has an nexus file attachment. -
attachment="example.nex" A nexus formatted file attachment. -
header="<h3>Tree List</h3>$n" String that will decorate the value of format parameter. -
format="   * $treeid $treeName" This string is repeated according to the number of trees in the nexus file. $treeid & $treeName are replace with serial number and tree name. -
footer="<h3>End</h3>" String that will decorate the value of format parameter. -
separator="$n" This value is used to separate format parameter values. It can contain Foswiki recognised parameters. -
* Examples 1:
    header="<h3>Tree List</h3>$n"
    format="   * <a href='%SCRIPTURL{"rest"}%/PhyloWidgetPlugin/getNHX?web=System;topic=System.PhyloWidgetExample;attachment=Tree.nex;tree=$treeid'>$treeName</a>"

Topic revision: r13 - 24 Jun 2011, TemiVarghese
The copyright of the content on this website is held by the contributing authors, except where stated elsewhere. See Copyright Statement. Creative Commons License    Legal Imprint    Privacy Policy